PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58250.3.p
Common NameBRADI_2g58250, LOC100837477
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 275aa    MW: 29711 Da    PI: 8.248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58250.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05247270123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y C+ C+++F++++ L+ H r+ H
  Bradi2g58250.3.p 247 YFCNSCNRTFNSSMGLEDHSRMkH 270
                       78******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.365247274IPR007087Zinc finger, C2H2
PROSITE patternPS000280249270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKENVEVFVN VGGKRIMLGT LSVDKHPQVV TDQVFDKEFE LVHSSMTSNI CFTGYQFKIV  60
KSSNSSSKEG DDSDEEVPLA IPLDSNTDDY KNNQATHGVN KLTASRPADA PCSISKAAVQ  120
ETDSLEGPEG DHKDKTAAQD PSDDNDSKGS DQDMDHTPKK MKGNKRPVET PLKTPSAKKT  180
NIASPTVGKK TGSCVGKKSA HVHVATPYPA KQAHKISEHV HVATPHPAKH ARKTPENSDK  240
SKQSASYFCN SCNRTFNSSM GLEDHSRMKH GAAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567378.10.0PREDICTED: histone deacetylase HDT2-like isoform X1
TrEMBLI1HUF10.0I1HUF1_BRADI; Uncharacterized protein
STRINGBRADI2G58250.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-11histone deacetylase 2C